PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133548.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 254aa MW: 28669.6 Da PI: 9.8111

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	54	107	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ XP_009133548.1 54 PRLRWTPDLHLSFVRAVQRLGGPHRATPKMVLQMMNLKGLSIAHVKSHLQMYRS 107 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.601	50	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-28	50	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	54	109	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.85E-14	54	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-8	55	106	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDGTSSREKC AMWLDLNREE AVEKYNEEES SVEDEDQQVT SSNNVRQYVR SNMPRLRWTP 60 DLHLSFVRAV QRLGGPHRAT PKMVLQMMNL KGLSIAHVKS HLQMYRSKKL EATSLHEVGA 120 MMGAQRNYLL DMIDIPYGGL RHACYPKTVP SRVHNQGTVF TNLGANFVMR PSSWCNRLSG 180 NELHGVRGGL NNRDSLESKT LPLLEIRRTT PEKRVREEAA REVSSLKRSK PMPGDGINTM 240 LSLSLFSTSS GESP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133548.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133548.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1
Refseq	XP_013724349.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A397ZX97	0.0	A0A397ZX97_BRACM; Uncharacterized protein
STRING	Bo3g036170.1	1e-155	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	9e-90	G2-like family protein