PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133575.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 203aa    MW: 22524.2 Da    PI: 7.6181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12137182655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+      k  s a++L +Ave+Ik Lq
  XP_009133575.1 137 SIAERERRTRISGKLKKLQELVPNM----EKQTSYADMLDLAVEHIKGLQ 182
                     689*********************7....477*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.973131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-10135186No hitNo description
Gene3DG3DSA:4.10.280.101.9E-12136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9137182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEEGTGFPLG RPNGRYGGGG ERVPSRLKSE LRFSGGGSNS HQEHNSEVEG PSAINGVAST  60
SMSFGNDHDN WDNSPSHISF TIDEPGKRSK TTDFFTLETP FSMPQTSLEM ESLINIPEDS  120
VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG  180
LQHHIESLEK GIERCTCGAC KKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.265423e-54flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133575.11e-150PREDICTED: transcription factor bHLH129-like
RefseqXP_022576014.11e-150transcription factor bHLH129-like
SwissprotQ9ZW812e-86BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A397ZX571e-149A0A397ZX57_BRACM; Uncharacterized protein
TrEMBLM4C7W31e-149M4C7W3_BRARP; Uncharacterized protein
STRINGBra000291.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-102bHLH family protein