PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133702.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 224aa    MW: 25700.6 Da    PI: 8.2337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0597119123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk+F++   L  H  +H
  XP_009133702.1  97 FKCETCGKVFNSYQALGGHRASH 119
                     89**********99999998887 PP
2zf-C2H213.20.00027146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_009133702.1 146 HQCPICFRVFTSGQALGGHKRSH 168
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.5E-1296121IPR007087Zinc finger, C2H2
SuperFamilySSF576678.52E-896168No hitNo description
Gene3DG3DSA:3.30.160.604.5E-497125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.73997124IPR007087Zinc finger, C2H2
SMARTSM003550.01597119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139121.2E-10145168IPR007087Zinc finger, C2H2
SMARTSM003550.08146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNPTRKRSKR TRKLGSFDFD DFKKVRTSQP GGEVVTEPEH HSSASDTTTE EDLAFCLIML  60
SRDKWKQQKK KTIVVEEEDD EREDYKPSKN RGGRGRFKCE TCGKVFNSYQ ALGGHRASHK  120
KNKTFTTMTS TKTEHEKTLT ESEKVHQCPI CFRVFTSGQA LGGHKRSHGS NNIGSRRELS  180
VNQSVRSIKE EEEEEEVSVK QRMIDLNLPA PNEDDETSIV FNEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133702.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133702.21e-166PREDICTED: zinc finger protein ZAT4 isoform X2
RefseqXP_018512743.11e-166PREDICTED: zinc finger protein ZAT4 isoform X1
SwissprotQ9SHD03e-91ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLM4C8441e-164M4C844_BRARP; Uncharacterized protein
STRINGBra000372.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-81C2H2-like zinc finger protein