PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133708.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 607aa    MW: 66713.1 Da    PI: 5.228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.2e-912526062374
            GRAS   2 velLlecAeavss.gdle.laqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                     +e+L+++Ae +++ gd++ laq +Larl+++ +s++    p++R+a+++ eAL + +++       a pp  t ++  + ++aa+++fse+sP+l
  XP_009133708.1 252 IEQLFNAAELIATtGDHTiLAQGILARLNHHlSSSYNnkAPFHRAASHISEALLSLVHD-------AAPPLLT-PEILILRIAAYRTFSETSPFL 338
                     789*******998655555***********9755444246******************9.......4444444.5689***************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                     +f ++ aNq Ile   g er+H+iDfd+++G+QW +L+q+La ++++   l++T++++p s+  ++ el+ t+e+L++fA el++pfe ++l  +
  XP_009133708.1 339 QFVNFPANQSILEL--GFERIHVIDFDVGYGGQWSSLMQELARKRGS--CLKVTVFAPPPSSvsDEFELRFTEENLRSFAGELKIPFEMELLSLE 429
                     *************7..99************************98777..9*******99888899**************************9888 PP

            GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      l +  ++ L++++  +Ea+aVnl l+             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a+   
  XP_009133708.1 430 LLLNPAYWPLSLRSseKEAVAVNLPLSSVDSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTLLESLDAN--- 513
                     88888999998887779*******99666655........5667************************************************... PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                     +s+e+++vEr++++++i++++ +++++     e+   Wr+ ++++GF+p++ls++a++qa++l+++ +++g++ve+++ slv++W++++Lv+vSa
  XP_009133708.1 514 QSQEDSSVERFWVRPSIEKLLVKRHRW----IERSPPWRSLFTQCGFTPASLSQTAETQAECLMQRNPVRGFHVEKRQSSLVMCWQRKELVTVSA 604
                     8**************************....89999*********************************************************** PP

            GRAS 373 Wr 374
                     W+
  XP_009133708.1 605 WK 606
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.518226586IPR005202Transcription factor GRAS
PfamPF035142.2E-88252606IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MPLSFERFQG EGVFSVSSFY SDSHKTRFNQ DKTGIEEERE DLGYVFRGGL QEPTSVLDAL  60
RSPSPLASHS STTTNTTLSS SHGGGGGPPP PPPPEAPAGD DKCSQISLDD LDGVISPDQE  120
QSILRLIMDP GSGFGVLDPG FGFGSGSAPV SDGSNPLLSC GFPFNEQTHQ IPNQESLFSN  180
PPSSPPTKRF NSGSHQPVFP FSDPVPVQQY QFPVQFHPQQ ISPSSSSSPA AALVPVPVLP  240
PGIANDDQSV IIEQLFNAAE LIATTGDHTI LAQGILARLN HHLSSSYNNK APFHRAASHI  300
SEALLSLVHD AAPPLLTPEI LILRIAAYRT FSETSPFLQF VNFPANQSIL ELGFERIHVI  360
DFDVGYGGQW SSLMQELARK RGSCLKVTVF APPPSSVSDE FELRFTEENL RSFAGELKIP  420
FEMELLSLEL LLNPAYWPLS LRSSEKEAVA VNLPLSSVDS GYLPLILRFL KQISPNVVVC  480
SDRGCDRNDA PFPNAVIHAL QYHTTLLESL DANQSQEDSS VERFWVRPSI EKLLVKRHRW  540
IERSPPWRSL FTQCGFTPAS LSQTAETQAE CLMQRNPVRG FHVEKRQSSL VMCWQRKELV  600
TVSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2632860680375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133708.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLM4C8470.0M4C847_BRARP; Uncharacterized protein
STRINGBra000375.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]