PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133871.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 417aa    MW: 45543.1 Da    PI: 7.7277
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17136185155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009133871.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15136193IPR016177DNA-binding domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-17137193IPR001471AP2/ERF domain
SMARTSM003807.9E-33137199IPR001471AP2/ERF domain
CDDcd000184.32E-11137192No hitNo description
SMARTSM003800.0029229277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMLDLNLDAD SPESTQYGDS NADRQTSDGS GNRVDESGTS TSSVINADAD DDSCSARAFT  60
HSFDILKVGG GGGDESTASI SGVTKELFPV AGDCGKLRGW SSRSWMDLSV GTKSVAPAPA  120
PAQVRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGVDADI NFTVGDYEED MKQVQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKYGK  240
WETGMGQLLA KTAYNKAKIS SNGREAVANF EPSTFQKEIN SESGHDKLDL NLGISLSPGN  300
AAKQNGRLSH FPSNPYETPP GVSLTIDTEF MGKPVNTHLP YGSSDHRANF EENISEVGMM  360
SNWGWHRPGQ TSTMRPQQPG AQPPQLFSVA AASSGFSNFR QQPPSENASH GYFYPQF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.162619e-59bud| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133871.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894320.0AC189432.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068E07, complete sequence.
GenBankAC2409850.0AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133871.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLM4C8F90.0M4C8F9_BRARP; Uncharacterized protein
STRINGBra000487.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.10.0related to AP2.7