PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134170.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26378.9 Da    PI: 9.9639
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.5e-30957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krien++nrqvtf+kRrng+lKKA+EL vLCdaeva+i+fs++g+lyey
  XP_009134170.1  9 KRIENSTNRQVTFCKRRNGLLKKAYELAVLCDAEVALIVFSTRGRLYEY 57
                    79**********************************************9 PP
2K-box98.21.3e-32761733100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++++ s++e +a+++qqe+akL+++i+++q+++R+l+G++L+ L++keL+q+e++Lek++++iRskK+elll++ie+l k+e +l++e  +Lr+k
  XP_009134170.1  76 NANTHSVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSALNVKELKQVENRLEKAISRIRSKKHELLLAEIENLHKREIKLDNESIYLRTK 170
                     55566699*************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_009134170.1 171 IAE 173
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-32283IPR002100Transcription factor, MADS-box
CDDcd002657.22E-43275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-2486171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.86587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELAVLCD AEVALIVFST RGRLYEYGNN  60
NIRATIERYK KASSDNANTH SVQEINAAYY QQESAKLRQQ IQTIQNSNRN LMGDSLSALN  120
VKELKQVENR LEKAISRIRS KKHELLLAEI ENLHKREIKL DNESIYLRTK IAEVERFQQH  180
HHQMVSGTEM TAIEALASRN YFAHNIMTIG SGSGAGHGCS YFDPDKKTHL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q1e-20173173Myocyte-specific enhancer factor 2B
1tqe_R1e-20173173Myocyte-specific enhancer factor 2B
1tqe_S1e-20173173Myocyte-specific enhancer factor 2B
6c9l_A1e-20173173Myocyte-specific enhancer factor 2B
6c9l_B1e-20173173Myocyte-specific enhancer factor 2B
6c9l_C1e-20173173Myocyte-specific enhancer factor 2B
6c9l_D1e-20173173Myocyte-specific enhancer factor 2B
6c9l_E1e-20173173Myocyte-specific enhancer factor 2B
6c9l_F1e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.114730.0flower| silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517670.0EU551767.1 Capsella bursa-pastoris SEEDSTICK-like protein (STKb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134170.11e-170PREDICTED: agamous-like MADS-box protein AGL11
SwissprotQ388361e-138AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A398A6271e-169A0A398A627_BRACM; Uncharacterized protein
TrEMBLM4C9181e-169M4C918_BRARP; Uncharacterized protein
STRINGBra000696.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49942234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-140MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]