PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134228.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 217aa    MW: 24604.2 Da    PI: 9.1172
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof43.47.3e-1421532961
          zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    Pr   ++Crr+Wt+GGalr+vP+Gg +rk k+ 
  XP_009134228.1 21 PRVCPRNCRRFWTHGGALRDVPIGGRARKIKHI 53
                    88888************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.7E-111552IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDNSNVVVRG NRQVNEEKPP PRVCPRNCRR FWTHGGALRD VPIGGRARKI KHIDQPSVSQ  60
VVPDEIQQVN HHQPFSHVQE TTQFLEPFGG SSSSAVVGNH FSSLPETHGD MMLPTRSIPP  120
MDLFDGLFHQ GYYGAGLNNF VGNHLMNQSI GGHVDNYNSY RVNQENPNMR NQSFTNTMIM  180
NHNVGTSERR GYPRIDHMIN NNNNNNNNKS VFRSSYH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134228.11e-160PREDICTED: dof zinc finger protein DOF4.3-like isoform X2
SwissprotQ9SUA94e-43DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398ARP31e-146A0A398ARP3_BRACM; Uncharacterized protein
TrEMBLM4DAI21e-146M4DAI2_BRARP; Uncharacterized protein
STRINGBra013492.1-P1e-147(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-37Dof-type zinc finger domain-containing protein