PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134239.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 250aa    MW: 28349.4 Da    PI: 8.6501
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.31.7e-332177561
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     + cprC s+ntkfCyynnys+sqPry C++Crr+Wt+GGalr++P+Gg +rk k++
  XP_009134239.1 21 PRVCPRCSSDNTKFCYYNNYSVSQPRYNCRNCRRFWTHGGALRDIPIGGRARKIKRT 77
                    678**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-221676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.6642276IPR003851Zinc finger, Dof-type
PfamPF027012.2E-302276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDKLSVIVKG DHQVNEEKPP PRVCPRCSSD NTKFCYYNNY SVSQPRYNCR NCRRFWTHGG  60
ALRDIPIGGR ARKIKRTSID QPSVSQVTSV IQQVNHHQPF SHVRETNEFL EPFCGSSSSV  120
AVGNHFSSLP EIHGDMVFPI QTIPPMDRFD LFDGSFNQGY YGVGFNDMVG NPLMNQSIGG  180
HVDNYNSYRV NQENPNKRNQ SFNNSMNMNH NASTSGSRGY PGIDHMTNNN NKDRNKCVFS  240
SSYHLEKYGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134239.10.0PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA93e-74DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398AKU60.0A0A398AKU6_BRACM; Uncharacterized protein
TrEMBLM4DAI30.0M4DAI3_BRARP; Uncharacterized protein
STRINGBra013493.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.15e-71Dof-type zinc finger domain-containing protein