PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134533.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 793aa    MW: 87071.8 Da    PI: 6.0993
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29e-21134189156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+k+l L++rqVk+WFqNrR+++k
  XP_009134533.1 134 KKRYHRHTPQQIQELESMFKECPHPDEKQRLDLSKRLCLETRQVKFWFQNRRTQMK 189
                     688999***********************************************999 PP
2START207.17.1e-653215411206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     ela++a++elvk+a++eep+Wvks     +++n++e++++f+ +k     +ea+r+sg+v+ ++  lve+l+d++ +W e+++    +a t++vi
  XP_009134533.1 321 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQEEYVRTFSXNKQagLVTEASRTSGMVIINSLALVETLMDSN-RWMEMFPcnvaRAITTDVI 414
                     5899*************************************9999999***************************.*******9999******** PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     s g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++   s v +++lpSg+++++++ng+skvtwveh++++
  XP_009134533.1 415 SGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFSKQHAEGVWAVVDVSIDTVRDNS-GGSAVTVRRLPSGCVVQDMPNGYSKVTWVEHAEYD 508
                     ***********************************************************.79999999*************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++h l+r+l++sgl +g ++wvatlqrqce+
  XP_009134533.1 509 ENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 541
                     *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21121191IPR009057Homeodomain-like
SuperFamilySSF466894.71E-20122191IPR009057Homeodomain-like
PROSITE profilePS5007117.038131191IPR001356Homeobox domain
SMARTSM003892.6E-17132195IPR001356Homeobox domain
CDDcd000869.83E-18133191No hitNo description
PfamPF000462.7E-18134189IPR001356Homeobox domain
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PROSITE profilePS5084843.74312544IPR002913START domain
CDDcd088751.48E-112316540No hitNo description
SuperFamilySSF559611.01E-29316541No hitNo description
SMARTSM002348.2E-42321541IPR002913START domain
PfamPF018525.0E-57321541IPR002913START domain
SuperFamilySSF559611.72E-23560779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MNFGSLFDNT NGGSPTGARI LSGLTYGNHT TASTVIPGGA MAQVAAASLF SPPINTKPVY  60
SSGLSLALEQ PERAGPNRGE ASMRNNNNDN NNFEGSTTNR RSREEEHESR SGSDNVEGIS  120
GEDQDADDNK PPRKKRYHRH TPQQIQELES MFKECPHPDE KQRLDLSKRL CLETRQVKFW  180
FQNRRTQMKT QLERHENALL RQENDKLRAE NMSIREAMRN PMCNNCGGPA MLGDVSLEEH  240
HLRIENARLK DELDRVCNLT GKFLGHHNHH SSSLELAVGN NNGGNFNFPP DFGGGGCLPP  300
PPQQHQSMVI NGIDQRSVLL ELALTAMDEL VKLAQSEEPL WVKSLDGERD ELNQEEYVRT  360
FSXNKQAGLV TEASRTSGMV IINSLALVET LMDSNRWMEM FPCNVARAIT TDVISGGMAG  420
TRNGALQLMN AELQVLSPLV PVRNVNFLRF SKQHAEGVWA VVDVSIDTVR DNSGGSAVTV  480
RRLPSGCVVQ DMPNGYSKVT WVEHAEYDEN QIHHLYRPLL RSGLGFGSQR WVATLQRQCE  540
CLAILMSSSV TPHDNSSITP GGRKSMLKLA QRMTVNFCSG ISAPSVHSWS KLTVENVDPD  600
VRVMTRKSVD DSGIVLSAAT SVWLPASPQR LFDFLRNERM RCEWDILSNG GPMQEMAHIA  660
KGQDQGNSVS LLRSNPMNAN QSSMLILQET CIDASGALVV YAPVDIPAMN VVMNGGDSSY  720
VALLPSGFAV LPDGGSGDVE QRPVGGGSLL TVAFQILVNN LPTAKLTVES VETVNNLISC  780
TVQKIRDALQ CES
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134533.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A3P6AA330.0A0A3P6AA33_BRACM; Uncharacterized protein
STRINGBo3g054630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]