PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134667.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 291aa    MW: 33047.4 Da    PI: 4.4098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.5e-061912291255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L++l+ +      +K + a++L  A+eYIk Lq
  XP_009134667.1 191 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 229
                     677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.852179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-6189232No hitNo description
SuperFamilySSF474596.8E-11189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0056190234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9193233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTEEFETVGV RTGPWWSFPS GMFSDLSQPR STEISIDIGG FEWQNIDNID AETYDKSHTS  60
TLSSNRNLDS TSQVNAWNQY NHREEERFDP ISSFLEGLFD NSELSVPSVK PELLESFHFF  120
DDVFLNESRT VSVFDHEIGD KHDEEIQAWK SLITCERASE KTEDLEDIES LPPLKRPRLE  180
TPTQFPSFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHD AIEYIKFLQE QITVSSNPQL  240
NSKGSGEQKQ WSYNGTHAED SSLGQDLRSR GLCLIPISST FSTSPLHFGL I
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1045301e-129EF104530.1 Brassica rapa clone E30_5 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134667.10.0PREDICTED: transcription factor bHLH103
SwissprotQ8VZ221e-133BH103_ARATH; Transcription factor bHLH103
TrEMBLM4DAL00.0M4DAL0_BRARP; Uncharacterized protein
STRINGBra013520.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147121418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-135bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]