PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134682.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 259aa    MW: 27743.8 Da    PI: 8.2672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+
  XP_009134682.1   4 SCNGCRVLRKGCSDDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e+++ +e
  XP_009134682.1  99 AVEAVMKGE 107
                     **9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2843109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EMATDAATNG  120
QGPPLKMYDI RHISKDESSA AAAAAATGST DLKRPKPRRA KRVAGVAKPS ESEEKEASHV  180
SSLSHQSEVV AAQEGESNIS EVMTFSPPAV QSSGEIKLDL TLGLEPVSHA CNVVPLKKRK  240
IGAFATCQED IPCKTELKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153162RPKPRRAKRV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134682.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-154LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A291LR160.0A0A291LR16_BRARR; Transcription factor LBD41a
STRINGBo3g055690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-141LOB domain-containing protein 41