PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009134849.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 281aa MW: 30909.9 Da PI: 10.0905

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009134849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	90.3	2.6e-28	136	195	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++k ++k rkpy+++SRh hAlrRpRgsgGrF XP_009134849.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAvldQNKPSSKFRKPYMYHSRHLHALRRPRGSGGRF 195 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.9E-27	133	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.969	134	198	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.7E-23	137	195	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-20	137	159	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-20	172	195	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLAGDSDSLA GVKVRSAGGI EQGVNKQSNS 60 ASHFSFSLGD VKSPRVVPKP HGSAFSMQPP YLELGFSQPQ MYTKYPCVEQ QYYGVLSPYG 120 SHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA VLDQNKPSSK FRKPYMYHSR 180 HLHALRRPRG SGGRFLNTKS QNNAKKADGT KPTQPQQSNS QDSDVLHPEN VTMNLSNRLG 240 SEVTSMNYFL SSSVHPLGGM VMPSKWITAA AMDNGCCSFK T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	5e-14	138	196	5	60	HAPB protein
4g92_A	5e-14	138	196	5	60	HAPB protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.22176	0.0	flower\| root\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009134849.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT026062	0.0	BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009134849.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_018512512.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2
Swissprot	Q9M9X4	1e-162	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	M4CAD5	0.0	M4CAD5_BRARP; Uncharacterized protein
STRING	Bra001164.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-164	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]