PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134895.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 450aa    MW: 47776.4 Da    PI: 7.9118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-125175327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG C yG+rC+F+H++
  XP_009134895.1 51 EPDCIYYLRTGVCGYGSRCRFNHPR 75
                    689********************96 PP
2zf-CCCH38.61.8e-1298123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCkyG++Ck++H++
  XP_009134895.1  98 GQPVCQHFMRTGTCKYGGSCKYHHPR 123
                     5789********************96 PP
3zf-CCCH39.49.8e-13144168226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G +C+F+H+
  XP_009134895.1 144 GEKECSYYMRTGQCKFGLTCRFNHP 168
                     7899********************9 PP
4zf-CCCH40.16e-13295319226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG Ck+G++C+++H+
  XP_009134895.1 295 DQPECQYFMRTGDCKFGASCRYHHP 319
                     689*********************9 PP
5zf-CCCH33.85.7e-11340366127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t+ C +fa+ G+Ck+G+ CkF H++
  XP_009134895.1 340 PGTAQCTHFAQHGICKFGPACKFDHSM 366
                     689**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0234876IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-696123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.83596124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-697123IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1098123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5101123IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408142170IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6144171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4148167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91293321IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6293320IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10295319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4299318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173339367IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6340366IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8340365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4342365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSIEW TSHGGETRVE GSMWRLGLTG GGEAYPERSN EPDCIYYLRT  60
GVCGYGSRCR FNHPRDRGAV IGGVRGGGGD GALPERMGQP VCQHFMRTGT CKYGGSCKYH  120
HPRQGGGSVA PVSLSYLGYP LRPGEKECSY YMRTGQCKFG LTCRFNHPVP QPQQQQPQTQ  180
TIYPTLQSQP MPSSQQYGLV LTRPSLLPGS YLPSPYGPPM VLPPGMVTYP NWNPYPASLT  240
AMPSPGTKTQ PSIGTSSVYG MAPLSPSGTA YTGTYQSGGP SLTTSREEPF PQRPDQPECQ  300
YFMRTGDCKF GASCRYHHPL DAVQTNTGVL LSPIGLPLRP GTAQCTHFAQ HGICKFGPAC  360
KFDHSMASSL SYSPSASSLT DMPVAPYPIG SSTLSGASAP VSSSNEPTTE AVTAVVSSPM  420
VSGLSSQEPA ETGGDSASVS GSIEAKTSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.240820.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892330.0AC189233.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134895.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLM4CAG70.0M4CAG7_BRARP; Uncharacterized protein
STRINGBra001196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]