PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135062.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 171aa    MW: 19197.8 Da    PI: 4.511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000573355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + Fs+   L  H++ H
  XP_009135062.1 33 YTCSFCVRGFSNAQALGGHMNIH 55
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-63159No hitNo description
Gene3DG3DSA:3.30.160.604.2E-43157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0533360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MENIRNPKNS DDHSEHISRN TRQSVDNSLS RSYTCSFCVR GFSNAQALGG HMNIHRRDRA  60
NLRHKLMEDN KDDVVAESDS SGVVSLDLNE KQQEDDLACD DDDQDQGVEK DIIPGQKLGF  120
WVQENKLDIN DDGKVTEVCS IDGSSSSHHL ENENLDLELR LGQSAVEKKT T
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}.
Functional Description ? help Back to Top
Source Description
UniProtActivation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893940.0AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135062.11e-123PREDICTED: transcriptional regulator TAC1-like
SwissprotQ9SR342e-82TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A398A2H61e-121A0A398A2H6_BRACM; Uncharacterized protein
TrEMBLM4CAT91e-121M4CAT9_BRARP; Uncharacterized protein
STRINGBra001318.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1423833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-17C2H2 family protein
Publications ? help Back to Top
  1. Ren S,Johnston JS,Shippen DE,McKnight TD
    TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
    Plant Cell, 2004. 16(11): p. 2910-22
    [PMID:15486103]
  2. Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD
    Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1.
    Plant Cell, 2007. 19(1): p. 23-31
    [PMID:17220202]