PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135143.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 384aa    MW: 43052.8 Da    PI: 4.2388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-1870120155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k ++g
  XP_009135143.1  70 CSFRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAACAYDEAAKVMYG 120
                     579*****99.**********8...2.58***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-3070128No hitNo description
PfamPF008475.3E-1270120IPR001471AP2/ERF domain
SMARTSM003801.5E-3571134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3071129IPR001471AP2/ERF domain
PROSITE profilePS5103221.64171128IPR001471AP2/ERF domain
PRINTSPR003671.3E-97283IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2072130IPR016177DNA-binding domain
PRINTSPR003671.3E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSVNEQTGTD TSSKKRKARA RADGKTVADR LKQWKDHNEG EESKPRGKVH AKGSKKGCMK  60
GKGGPENTKC SFRGVRQRVW GKWVAEIREP NRVSRLWLGT FPTAEEAACA YDEAAKVMYG  120
SSARLNFPCS EVATTSSQSE VCTVEDKGVV GGGDVCVKRE DGDCESRAVS QIVDVKESCG  180
DSRVQDTSVD ERRDVVNSRL SSYLLDEFEL DYQSRLTKEL EEPKEEEDEV IQPQPQPQPE  240
LTVADYGWPN DMQNSVADYD WPNDMQNEPG FWDQDDLFDV DELLGDLDVD LLTGTDPSQN  300
QNQEQVHPGG NDSHPFLLEP HNDICQNQEQ VQPDGDDSHP FQLEPRDDPC QNQDHVQPGG  360
DDSHPLDLEP HDGHEFFDLS FLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1772128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135143.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135143.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821338e-88DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLM4CB070.0M4CB07_BRARP; Uncharacterized protein
STRINGBra001386.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.19e-56DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]