PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135207.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 235aa    MW: 24711.7 Da    PI: 10.0948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-073356225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F+H
  XP_009135207.1 33 KSKPCTKFFSTSGCPFGENCHFSH 56
                    7789******************** PP
2zf-CCCH33.85.8e-11200225127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +f++ G C +GdrC+FaHg+
  XP_009135207.1 200 FKTKMCERFSK-GSCTFGDRCHFAHGE 225
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1123159IPR000571Zinc finger, CCCH-type
SMARTSM003560.223158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-63258IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-53356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-73356IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.65E-1592173IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-14102171IPR004088K Homology domain, type 1
SMARTSM003224.6E-10102172IPR004087K Homology domain
PROSITE profilePS5008414.508103167IPR004088K Homology domain, type 1
PfamPF000135.6E-11105169IPR004088K Homology domain, type 1
CDDcd001055.24E-12105167No hitNo description
Gene3DG3DSA:4.10.1000.104.7E-16194229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446199226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8199229IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6199225IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7200225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDTLKRGRPE ANSNGGGFKK SKQEMESTGL GSKSKPCTKF FSTSGCPFGE NCHFSHYVPG  60
GYNAVAQLTN MAPPMPQVSR NMQGSGGGGR FSGPGHVSSF GASATAKISV DASLAGAIIG  120
KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFEQI NEASVMVREL IGRLNSAARR  180
PPGGGGGIGS EGKPHPGSNF KTKMCERFSK GSCTFGDRCH FAHGEAELRR SGIPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.26904e-84flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135207.11e-172PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C31e-136C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLM4CB571e-171M4CB57_BRARP; Uncharacterized protein
STRINGBra001436.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-122C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]