PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009135231.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 287aa MW: 31975.6 Da PI: 4.7886

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009135231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.1	9.4e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++++v+r ++fdfl ++v + XP_009135231.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.1E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	7.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHAQGQGHGD VTMEDRSISK RRKPISDEVN 120 DSDEESKKSK TQEMGNTKPS GRGSRGRGRG RGRGGRAARA AERENLNNRE MELESSMVEQ 180 KPPQDSIQMH VSVSSPQEIE KKDGIAASNE DTKQQLQTPK EGIDIDLNAE SLDLNETKPA 240 PVAATDSATA SEEYTCWSME LGTIDPAQFA SLGKRIDEDE EDYDEEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	153	RGRGRGRGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.12872	3e-82	bud\| flower\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009135231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353067	0.0	AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135231.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A398A848	0.0	A0A398A848_BRACM; Uncharacterized protein
STRING	Bo3g064920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-131	nuclear factor Y, subunit C11