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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009135500.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 625aa MW: 68928.8 Da PI: 6.8966 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.5 | 1.4e-28 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
XP_009135500.1 209 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 262
79*******************.********************************7 PP
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| 2 | Response_reg | 77.1 | 6.2e-26 | 8 | 116 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ + +l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + G
XP_009135500.1 8 VLVVDDDPTCLAILERMLRACSY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 100
89*********************.***************888889**********************6644.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
XP_009135500.1 101 AVDYLIKPVRMEALKN 116
***********99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 4.1E-183 | 1 | 617 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 2.85E-36 | 4 | 130 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.0E-42 | 5 | 151 | No hit | No description |
| SMART | SM00448 | 4.4E-31 | 6 | 118 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.771 | 7 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.6E-23 | 8 | 116 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.26E-27 | 9 | 121 | No hit | No description |
| PROSITE profile | PS51294 | 11.54 | 206 | 265 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.47E-19 | 207 | 266 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.1E-30 | 208 | 267 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.0E-24 | 209 | 262 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.0E-8 | 211 | 261 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 625 aa Download sequence Send to blast |
MFSSGLRVLV VDDDPTCLAI LERMLRACSY EVTKCNRAEM ALSLLRKNKH GFDIVISDVH 60 MPDMDGFKLL EHVGLEMDLP VIMMSADDSK SVVLKGVTHG AVDYLIKPVR MEALKNIWQH 120 VVRKRRTEWS GVPTHSGSVE ETGERRQQQQ QREAVSRGEE DGADDNNSSS VNEGGNNNWR 180 NSSSSSSRKR KEEEGGEEQG DEDASNLKKP RVVWSVELHQ QFVAAVNQLG VEKAVPKKIL 240 ELMNVPGLTR ENVASHLQKY RIYLRRLGGV SQHQGSLNNS FMTSQDASFG SLPTLNGFDL 300 QALAQLPAQS LAQLQAAGLG RPAAMNSKPG LHVSSSIVDE RSVFSFDNPK MNLLHGVPTG 360 MEPRQLAGLQ QHRMTIQQQI AAVRAGHSLQ NNGMRMPLAS QPQQPFSRPQ QSSIRQPMLP 420 NRSGFSGRSS IPESSRVLPT TSYTNLAAQQ QHSMAFSNFQ QELPVNSFPL ASAPGLSVRK 480 PHSSSSSSSS SYREEFNSSE AGFSTPSYDM FSSRQNDWDL RSMLSPHQDS QAYSSSSMSR 540 NNNTAVAATD HSRNHQQTPQ GMVSHHQVYG NGGGSSVKVK SETMGFHEQY SNQEDLMSAL 600 LKQEGIGPVD TEFDFDAYSI DDIPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-22 | 208 | 267 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed only from 5 days post germination onward, when the fixed meristem cell number is established. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_009135500.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC189317 | 0.0 | AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009135500.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X2 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | M4CBR3 | 0.0 | M4CBR3_BRARP; Two-component response regulator | ||||
| STRING | Bra001643.1-P | 0.0 | (Brassica rapa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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