PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135555.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 259aa    MW: 29946 Da    PI: 8.3174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-1218110399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     k l+p  + ks ++ ++p +f+++  ++   +  +++  ++++sW++ l  r  +++ +++++ W eFv++n L   D++vF++++++ f   v+
  XP_009135555.1  18 KSLSPGQNWKSkSMRIIPEEFLRSTHES--FEHRVVFSVPWNNSWQLWL--RPDKKGlFMIKEDWDEFVNDNFLGPDDTLVFTHQDTMYF--QVR 106
                     55555555555255699*****998644..4457***************..8888888*************************9887888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_009135555.1 107 IFKK 110
                     9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-1513112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1514111IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-1415109No hitNo description
SMARTSM010191.8E-1216111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.95517111IPR003340B3 DNA binding domain
PfamPF023626.7E-1028110IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-9158243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-7159246IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.22165258IPR003340B3 DNA binding domain
PROSITE profilePS508637.204222259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLPERKMQEC LNKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW  60
QLWLRPDKKG LFMIKEDWDE FVNDNFLGPD DTLVFTHQDT MYFQVRIFKK DGKEIISAPL  120
EFEPQKETTS ASASASGRTA TRGRKSCANL QNPERYLLNP QNPYFTKTLK KTNHLLHVGH  180
PVIRQYGLEF GPHDSSMYFI LPDGNKVDGL TKYYNGLPNF LGWADVCQQY NLKIGDTVVC  240
EFELSGRVVA AVRVHFVNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135555.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D93e-99Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A398A3Q50.0A0A398A3Q5_BRACM; Uncharacterized protein
STRINGBo3g071320.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.23e-95B3 family protein