PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136024.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 261aa    MW: 29121.6 Da    PI: 7.7409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-1366110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
   XP_009136024.1  66 PWTEEEHRLFLVGLRKLGKGDWRGISRNYVMSRTPTQVASHAQKY 110
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17659115IPR017930Myb domain
SuperFamilySSF466892.39E-1661114IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1762113IPR006447Myb domain, plants
SMARTSM007172.7E-1063113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1065109IPR009057Homeodomain-like
CDDcd001671.99E-966111No hitNo description
PfamPF002493.7E-1166110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGNLSALAEH HRVSPSFPLA TGNHSDSPLS DHARYSNQDN EEYLSDEPAR GFGPIHRRVE  60
RKRGVPWTEE EHRLFLVGLR KLGKGDWRGI SRNYVMSRTP TQVASHAQKY FIRHTCSSRR  120
KRRSSLFDMV TDSSPTQEDT SSPSKELKNK TYLPSLELSL NNTTESEVVT TTAPPQGELE  180
EAIEPSNGLS TMLVPSGYFP PCFPVTCTIW LPASSTSLQG TEHSLEAETS SQQHHVLKPK  240
PGFAKERVNM DKMAGMSQVS I
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.229161e-114leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892180.0AC189218.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136024.10.0PREDICTED: uncharacterized protein LOC103860178
TrEMBLA0A3P5ZVF40.0A0A3P5ZVF4_BRACM; Uncharacterized protein
STRINGBo5g126180.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-124MYB_related family protein