PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136224.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 203aa    MW: 24108.9 Da    PI: 8.8832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.2e-181157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    i +  +r++ f+kR+ g+lKKA+EL vLC+++  +i fs++gkl+ +
  XP_009136224.1 11 IVDRQQRNIAFAKRKSGLLKKAYELFVLCNVQMVLIFFSPSGKLFLF 57
                    678899**************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-22284IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRVKIQMRK IVDRQQRNIA FAKRKSGLLK KAYELFVLCN VQMVLIFFSP SGKLFLFDTK  60
TRMEETIKKY VDVPIRPRFQ VQEETFIRRW IDVMRFESQY PESILRPREN FDDGILLQTR  120
SKEIEDEIFK CKAELAKVEQ QLGYFLKHPN QWGTRDDIEY QEKILEETLD KVRSRKKCLE  180
AQNEAFDASN CLLQTDVEIS PSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15172171MEF2 CHIMERA
6byy_B1e-15172171MEF2 CHIMERA
6byy_C1e-15172171MEF2 CHIMERA
6byy_D1e-15172171MEF2 CHIMERA
6bz1_A1e-15172171MEF2 CHIMERA
6bz1_B1e-15172171MEF2 CHIMERA
6bz1_C1e-15172171MEF2 CHIMERA
6bz1_D1e-15172171MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136224.11e-148PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_013665335.11e-148agamous-like MADS-box protein AGL66 isoform X1
TrEMBLA0A3P5Z1011e-147A0A3P5Z101_BRACM; Uncharacterized protein
STRINGBra011763.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17254910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-28AGAMOUS-like 66