PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136368.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 130aa    MW: 15149.2 Da    PI: 6.7443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.9e-1310103498
                     E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     vlt  d +++g+l+lp + +e++       + ++++ ++ + d + +s+ v+l  +k++ +y++++GWk+F ++ +Lk+gD++ ++  + +++++
  XP_009136368.1  10 VLTDTDLSTQGWLILPTQKIENIeknlgfTL-PRNGAQVEILD-NDKSYWVNL--NKNKAGYYIGEGWKKFRDERDLKTGDVIQLY--W-KDTKF 97 
                     678899999***********88887787533.34666788888.557777***..*******************************..4.34444 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                      ++++ 
  XP_009136368.1  98 IFSMCP 103
                     777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-155108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-15696IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.8277105IPR003340B3 DNA binding domain
SMARTSM010193.2E-127105IPR003340B3 DNA binding domain
CDDcd100173.73E-138103No hitNo description
PfamPF023625.0E-1110103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL  60
NKNKAGYYIG EGWKKFRDER DLKTGDVIQL YWKDTKFIFS MCPTEASQKG ESSSSIDQWE  120
NNKSYIKINK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136368.13e-92PREDICTED: B3 domain-containing protein At1g08985
SwissprotQ8GWU16e-39Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLA0A398A5R02e-79A0A398A5R0_BRACM; Uncharacterized protein
STRINGBo3g092070.16e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-41B3 family protein