PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136525.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 213aa    MW: 23038.1 Da    PI: 7.634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF++   L  H  +H
  XP_009136525.1  89 YKCSVCGKSFPSYQALGGHKTSH 111
                     9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-988111No hitNo description
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
SMARTSM003550.002289111IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-1489113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-9144171No hitNo description
PfamPF139124.3E-12148173IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12149171IPR007087Zinc finger, C2H2
SMARTSM003550.35149171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MALDTLNSPT STTAPPPFLT EPENLESWTK RKRTKRHRTV DQSHPPSEEE YLAICLLMLA  60
RGSSSSSSND GNDHHSPPAP PSDHHHRDYK CSVCGKSFPS YQALGGHKTS HRKPVSNTNC  120
QDTNNSGNGS VTNKGNISNG LIGQSGKTHK CSICFKSFPS GQALGGHKRC HYDGGNGNGS  180
NNHGFDLNLP ADHDETLVKS QLSGEELKSE SDY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136525.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136525.11e-157PREDICTED: zinc finger protein AZF1 isoform X1
SwissprotQ9SSW12e-61AZF1_ARATH; Zinc finger protein AZF1
TrEMBLM4D8V41e-155M4D8V4_BRARP; Uncharacterized protein
STRINGBra012914.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-71C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]