PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136529.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 241aa    MW: 26607.1 Da    PI: 7.2883
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.7e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+
  XP_009136529.1   2 SCNGCRVLRKGCSETCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWSVCQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_009136529.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1271107IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSVCQAAVET VLRGGSLRPI PELLTRDGGF  120
PSPTSDEASE ICMEMMNDSG DRNVYYHHSR FSSSRSRATA SPPKRRRLAS EQQQERPSSE  180
LDFSLIPTFP VKTTPFKEET RRPETPYSEE SVTTAPFLDH IASERFVRGG GETTKLLNLF  240
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136529.11e-179PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN231e-127LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM4D8V31e-178M4D8V3_BRARP; Uncharacterized protein
STRINGBra012913.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-120LOB domain-containing protein 38