PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136742.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 520aa    MW: 57529.9 Da    PI: 6.6463
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.4e-29131184155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  XP_009136742.1 131 KPRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEMMNVQGLTRENVASHLQKYRI 184
                     79*******************.********************************7 PP
2Response_reg227.9e-0915853109
                     CTTSEHHHHHHHHHHHTTTSEEE..EEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  53 mpgmdGlellkeireeepklpii..vvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     mp+m+G++ll++   e  +lp+i  +++a ++++ +l+ +  Ga d+l Kp+ +e+l +
  XP_009136742.1   1 MPDMNGFKLLEHVGLEM-DLPVIskLMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKN 58 
                     9************5544.67777558999999***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000721.4E-5158IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363923.5E-1221513IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.9E-16186No hitNo description
SuperFamilySSF521721.37E-11173IPR011006CheY-like superfamily
CDDcd001568.47E-10163No hitNo description
PROSITE profilePS5011019.425164IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129412.263128187IPR017930Myb domain
SuperFamilySSF466899.68E-20129188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29130189IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-25131184IPR006447Myb domain, plants
PfamPF002491.8E-8133183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MPDMNGFKLL EHVGLEMDLP VISKLMSADD SKSVVLKGVT HGAVDYLIKP VRIEALKNIW  60
QHVVRKKQNV SEHSGSVEET GGDRQQQRDD DDDDGGDNNN SSSGNNEGNL RKRKEEEQGG  120
DDKEDTSSLK KPRVVWSVEL HQQFVAAVNH LGVDKAVPKK ILEMMNVQGL TRENVASHLQ  180
KYRIYLKRLG GVSQHQGNIN HSFMTGQDPS YGPLNGFDLQ GLATAGQLQA QSLAQLQAVG  240
LGQSSSPLIK PGITSVDQRS FFTFQNSKSR FGDGHGPMMM NGGNKQTSLL HGVPTGHMRL  300
QQQQMAGMRV AGPSMQQQQQ SMLSRRSVPE TRSSRVLPGA THSAFNNSFP LASAPGMMSV  360
SDTKGVNEFC NPSYDILNNF PQQQHHNNNN SVNEWDLRNV GMVFNSHQDN TTSAAFSTSE  420
AYSSSSTHKR KREAELVVEH GQNQQQPQSR SVNPMNQIYM NDGGSVRMKT ETVTCPPQAT  480
TMFHEQYSNQ DDLLSALLKQ EGLLDTEFDF EGYSFDNILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-23127189163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
GenBankAC2324690.0AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136742.10.0PREDICTED: two-component response regulator ARR2 isoform X3
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLM4D8D30.0M4D8D3_BRARP; Two-component response regulator
STRINGBra012743.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-162response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]