PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136798.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 214aa    MW: 23833.1 Da    PI: 10.2148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+ksF +   L  H+++H
  XP_009136798.1  4 HKCKLCSKSFCNGRALGGHMKSH 26
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868436IPR007087Zinc finger, C2H2
PfamPF139126.8E-6426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRQKLLG DSVYSSSSSS DGKTLAYGLR  60
ENPRKSCRVF NPDPESSIVY NSETETEPES VDPVRKQGRA DVSKKNKKKT RSKKRVFENS  120
SESGKKQTKR SKSNSNESPE PASSVSDGSP EQDLAMCLMM LSRDSREVKL KKPIIKAEEM  180
KPEKRHVPEL RRCMLDLNLP PPQESDVVAV VSAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136798.11e-154PREDICTED: zinc finger protein ZAT1-like
TrEMBLM4D8911e-153M4D891_BRARP; Uncharacterized protein
STRINGBra012701.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.13e-87C2H2-like zinc finger protein