PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136807.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 177aa    MW: 19704.1 Da    PI: 6.6846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-183988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_009136807.1 39 NFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
                    59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-343898No hitNo description
PfamPF008479.4E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103222.5373996IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-323997IPR001471AP2/ERF domain
SMARTSM003802.1E-3839102IPR001471AP2/ERF domain
PRINTSPR003674.8E-104051IPR001471AP2/ERF domain
PRINTSPR003674.8E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQDSSLPRPE RILRSPAPEK TINSSKTRDD QKGVSKHPNF RGVRMRQWGK WVSEIREPKK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAC HLPRPASSDP KDIQAAATAA  120
AVEWKPPESP SSTATSSSVA DDAFSDLPDL LLDVNDHKVD GFWDSFPYEE PFFMENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-163296672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615441e-153AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY5608741e-153AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBankBT0115761e-153BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBankBT0205921e-153BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBankCP0026871e-153CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973411e-153Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136807.11e-128PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK85e-95ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A3P6ACI21e-127A0A3P6ACI2_BRACM; Uncharacterized protein
TrEMBLM4D8831e-127M4D883_BRARP; Uncharacterized protein
STRINGBra012693.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.16e-88ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]