PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009136888.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 286aa MW: 32845 Da PI: 6.8922

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009136888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.6e-52	8	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yL +kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF+++dkky++g+r+nratk+gyWkatgkd+++ XP_009136888.1 8 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPKDKKYPNGSRTNRATKAGYWKATGKDRKIS 101 79**************************.99**********96435556888********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +g+ +g +ktLvfy+grap g +t W+mheyrl XP_009136888.1 102 CKsSGAIIGYRKTLVFYEGRAPLGDRTIWFMHEYRL 137 9977888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-59	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.576	8	161	IPR003441	NAC domain
Pfam	PF02365	2.9E-28	9	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQMGSSCLPP GFRFHPTDEE LIGYYLSRKV EGLEIELEVI PVIDLYKFDP WELPDKSFLP 60 NRDMEWFFFC PKDKKYPNGS RTNRATKAGY WKATGKDRKI SCKSSGAIIG YRKTLVFYEG 120 RAPLGDRTIW FMHEYRLCDD DLSQKSPNFK GAFVLCRVVK KNGLKTKTLK NKNEQAIGSG 180 CSSLATSPCR DQTTQFQSFK PSLTTNESSS IWISPDFILD SSKDYPQIQE GVSEYLPNYH 240 FPVNGANHQM EIAETSYLNI DQSIQTGYWP NFEYDQTGSF DYSNLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	8	162	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	8	162	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	8	162	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	8	162	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	8	162	20	169	NAC domain-containing protein 19
3swm_B	5e-51	8	162	20	169	NAC domain-containing protein 19
3swm_C	5e-51	8	162	20	169	NAC domain-containing protein 19
3swm_D	5e-51	8	162	20	169	NAC domain-containing protein 19
3swp_A	5e-51	8	162	20	169	NAC domain-containing protein 19
3swp_B	5e-51	8	162	20	169	NAC domain-containing protein 19
3swp_C	5e-51	8	162	20	169	NAC domain-containing protein 19
3swp_D	5e-51	8	162	20	169	NAC domain-containing protein 19
4dul_A	4e-51	8	162	17	166	NAC domain-containing protein 19
4dul_B	4e-51	8	162	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009136888.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136888.1	0.0	PREDICTED: NAC domain-containing protein 86
Refseq	XP_013741320.1	0.0	NAC domain-containing protein 71-like
Swissprot	O49697	1e-151	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A397KYE5	0.0	A0A397KYE5_BRACM; Uncharacterized protein
TrEMBL	M4D816	0.0	M4D816_BRARP; Uncharacterized protein
STRING	Bra012626.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-150	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]