PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009136967.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 157aa MW: 18729.7 Da PI: 10.1111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009136967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	76	100	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C++ +++ +++k+H+++ H XP_009136967.1 76 FYCDLCDYDYNSLDDFKKHLSRkeH 100 78******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.94E-5	72	103	No hit	No description
PROSITE pattern	PS00028	0	78	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MIISDRLGWR MSQSSLLQKS NYNCLLAYSV RPFVKPTLLT SAEWLWESLL AVSETKRHIL 60 QTCSGSEMVV ASTGMFYCDL CDYDYNSLDD FKKHLSRKEH TYEEHRMLSH SQSFPHRQRQ 120 FKISKYHDEV GYPPKTKRMR KAPRKCFLLR PLRFTRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009136967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136967.2	1e-109	PREDICTED: uncharacterized protein LOC103861020
TrEMBL	A0A3P6A747	4e-76	A0A3P6A747_BRACM; Uncharacterized protein
STRING	Bo7g106500.1	4e-64	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1032	4	4