PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137421.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRF

Protein Properties

Length: 418aa MW: 45648.4 Da PI: 7.1659

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77	1.9e-24	171	215	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+ XP_009137421.1 171 DMEPWRCKRTDGKKWRCSRNVVPDQKYCERHAHKSRPRSRKHVET 215 79****************************************997 PP
2	QLQ	50.6	5.9e-18	106	139	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 aF+ aQ+q+L++Q ++Ky++a++PvP+eLl + XP_009137421.1 106 AFSEAQWQELERQRNIFKYMMASLPVPSELLSPF 139 8******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.1E-10	105	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.2E-12	106	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.697	106	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.317	171	215	IPR014977	WRC domain
Pfam	PF08879	1.3E-19	172	214	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PASASFCYCS NGVADPIFSA 60 SNTSTLGEMF SLGGSNSTAG VSVADPFFTL TSSEMGRSMS GKEGAAFSEA QWQELERQRN 120 IFKYMMASLP VPSELLSPFS RNHTNNHDVT VARGGSLKLG IASNASNNTA DMEPWRCKRT 180 DGKKWRCSRN VVPDQKYCER HAHKSRPRSR KHVETPSHSH HNDARTTKNV ASQFATAYPQ 240 FYGPPLSQFS AVSTLPPASS SYDHHHSGLR WLMKEGDSIA TLNPEIHEAA QLKVGSSREL 300 KRGFEYDLNY IQNDPLVDQR FGALEGLLSP NRQETRRFLV EGEQDEAMGS SLTLSMAGGG 360 GMEEGEGRSQ HQWISHEGPS WLCSTTPGGP LAEALCLGVS NNPSTSTTTT SSCSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PASASFCYCS NGVADPIFSA  60
SNTSTLGEMF SLGGSNSTAG VSVADPFFTL TSSEMGRSMS GKEGAAFSEA QWQELERQRN  120
IFKYMMASLP VPSELLSPFS RNHTNNHDVT VARGGSLKLG IASNASNNTA DMEPWRCKRT  180
DGKKWRCSRN VVPDQKYCER HAHKSRPRSR KHVETPSHSH HNDARTTKNV ASQFATAYPQ  240
FYGPPLSQFS AVSTLPPASS SYDHHHSGLR WLMKEGDSIA TLNPEIHEAA QLKVGSSREL  300
KRGFEYDLNY IQNDPLVDQR FGALEGLLSP NRQETRRFLV EGEQDEAMGS SLTLSMAGGG  360
GMEEGEGRSQ HQWISHEGPS WLCSTTPGGP LAEALCLGVS NNPSTSTTTT SSCSRSSS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137421.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137420.1	0.0	PREDICTED: growth-regulating factor 8-like isoform X2
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	A0A3P6A0Q3	0.0	A0A3P6A0Q3_BRACM; Uncharacterized protein
STRING	Bra019244.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]