PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137503.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 366aa    MW: 40527.6 Da    PI: 5.5163
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.23.7e-31144244198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+Dei++LqG++df++++g +ps+++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ +k+ +q +fel
  XP_009137503.1 144 KMFQRLFSETDEIAMLQGFLDFTSTKG-DPSENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNslkrGKTEDQITYAKDLEQRTFEL 237
                     58*************************.9*************************************9999887778999**************** PP

          DUF573  92 skkiWgs 98 
                     s+kiWgs
  XP_009137503.1 238 SRKIWGS 244
                     *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-25146243IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAPKDKIANP PVASSSEEEE EEEEESGSSV EESNSSDDEA GDVQSKLTQK PVAPPPAAKK  60
PESDSEEESE SDSDSEPATK TKPLNAVVTK PIPPESSTAK RSLKQADNEP KKKAKTSTTT  120
EQAKKKPSGA DEEVKKISGE EAKKMFQRLF SETDEIAMLQ GFLDFTSTKG DPSENMDAFC  180
DYVKTLIDFN ASKAQIVTKL QRCKKKFVNI VKNSLKRGKT EDQITYAKDL EQRTFELSRK  240
IWGSDGVLPA KPRKKSKEVE VVSTPKKKAE VETQKKVSVV ENHHLSESRE MALFFKAENG  300
SVLGLDESSV SGVWDMVEDG PKKREMEEKL KKLKAKQMEL CLQRTALVDY TAKMIFKNNA  360
SSSSSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115PKKKAKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.75910.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410360.0AC241036.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137503.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-104STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLM4DRP00.0M4DRP0_BRARP; Uncharacterized protein
STRINGBra019183.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-92DNA-binding storekeeper protein-related transcriptional regulator