PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137522.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 184aa MW: 21082.2 Da PI: 7.64

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	25	76	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h e+E+ RR+++ s ++ Lr+llP + +++ s ++ L +Av+YI++Lq XP_009137522.1 25 KIMHREVEKHRRQEMASLYASLRSLLPLEF--IQGRRSTSDQLNEAVNYINHLQ 76 568***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.262	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	23	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-8	25	76	No hit	No description
Pfam	PF00010	4.5E-11	26	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	27	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-6	29	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MADFPEKGRK RRKEVRVGNE ENMEKIMHRE VEKHRRQEMA SLYASLRSLL PLEFIQGRRS 60 TSDQLNEAVN YINHLQGNIK DMSSKRDDLM LLSGQSFESR NELRSDNSNH VVIRPCFVGV 120 EIVFSVLQTP LSSVLHVLSE HGLCVLNCIS SNVNGRLIHT LQAEVNDLAL VDFAELKIYL 180 LRLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	RKRRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137522.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137522.1	1e-132	PREDICTED: transcription factor bHLH118 isoform X1
Refseq	XP_013738055.1	1e-132	transcription factor bHLH118
Refseq	XP_018513265.1	1e-132	PREDICTED: transcription factor bHLH118 isoform X1
Refseq	XP_022572640.1	1e-132	transcription factor bHLH118-like
Swissprot	Q9STJ7	1e-77	BH118_ARATH; Transcription factor bHLH118
TrEMBL	A0A078IIB1	1e-131	A0A078IIB1_BRANA; BnaA03g47370D protein
TrEMBL	A0A397L194	1e-131	A0A397L194_BRACM; Uncharacterized protein
TrEMBL	M4DRM4	1e-131	M4DRM4_BRARP; Uncharacterized protein
STRING	Bra019167.1-P	1e-132	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	4e-80	bHLH family protein