PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137536.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 29711.2 Da    PI: 9.1225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137536.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   +  +G  +W+t++ + g+ R +k+c++rw +yl
   XP_009137536.1 16 KGFWSPEEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
                     688*******************************************97 PP
2Myb_DNA-binding44.73.2e-1474114648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +eE+e+++  +  lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_009137536.1  74 AEEEEIILTFHSSLGNK-WSRIAKFLP-GRTDNEIKNYWHSHL 114
                      7****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.2361167IPR017930Myb domain
SuperFamilySSF466897.49E-2713110IPR009057Homeodomain-like
SMARTSM007171.3E-91565IPR001005SANT/Myb domain
PfamPF002491.3E-111763IPR001005SANT/Myb domain
CDDcd001675.35E-81963No hitNo description
Gene3DG3DSA:1.10.10.605.7E-201970IPR009057Homeodomain-like
PROSITE profilePS5129417.02768118IPR017930Myb domain
SMARTSM007171.7E-1268116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2371118IPR009057Homeodomain-like
CDDcd001675.55E-1073114No hitNo description
PfamPF002492.4E-1274114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLKTIAVERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRN MINAEEEEII LTFHSSLGNK WSRIAKFLPG RTDNEIKNYW HSHLKKKWLK  120
SQKLQHATSM STSSESLVAC GRRNPQTLIS NHVISFQPLP EKTSSSPSQE SNDNNNNYSC  180
SSGPEIARLF FSEWFTSSDP YFDHSSNLTD SNHIQTPNIQ GPASDYEESG DVNQFYYNEM  240
VMMSNSNWTL NDVVFGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24161177107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137536.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137536.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-135LAF1_ARATH; Transcription factor LAF1
TrEMBLM4DRL10.0M4DRL1_BRARP; Uncharacterized protein
STRINGBra019154.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-111myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]