PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137617.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 149aa    MW: 16557.8 Da    PI: 9.3918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-1585134154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +++kGVr+++ +g+W AeI+dps +    r +lg+f ta++A ka++ a+ kl 
  XP_009137617.1  85 TKHKGVRQKP-SGKWSAEIWDPSLQ---GRRWLGTFPTAKMAGKAYDDAAAKLV 134
                     69******99.7*********9653...688*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-885134IPR001471AP2/ERF domain
CDDcd000188.65E-2285145No hitNo description
Gene3DG3DSA:3.30.730.106.5E-1986137IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1386136IPR016177DNA-binding domain
PROSITE profilePS5103218.09786147IPR001471AP2/ERF domain
SMARTSM003803.3E-2086149IPR001471AP2/ERF domain
PRINTSPR003671.8E-58798IPR001471AP2/ERF domain
PRINTSPR003671.8E-5109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDHSENIPSC DRKPPRLTRD QEHVIMVSAL RQVISNVRGD DTSSSNSVAC EALHQPLEAG  60
PCPLCGITGC YGCAFPRREE IKKETKHKGV RQKPSGKWSA EIWDPSLQGR RWLGTFPTAK  120
MAGKAYDDAA AKLVKRKKAR RGTTNEEEP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137617.11e-109PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_013741557.11e-109ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK671e-62EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A3P6A8C91e-107A0A3P6A8C9_BRACM; Uncharacterized protein
TrEMBLM4DRE41e-107M4DRE4_BRARP; Uncharacterized protein
STRINGBra019087.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.11e-58ERF family protein