PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137795.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 351aa    MW: 40196.1 Da    PI: 6.374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.94.8e-50101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL +k+++k+         +            + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat 
  XP_009137795.1  10 LPPGFRFHPSDEELVCHYLYNKIRAKSdhgdvE---DggvdealkgatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATV 101
                     79***********************99665540...155556666664699*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  XP_009137795.1 102 SGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                     ***************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-568170IPR003441NAC domain
PROSITE profilePS5100553.87710170IPR003441NAC domain
PfamPF023656.2E-2711151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLYN KIRAKSDHGD VEDGGVDEAL KGATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDLSLQDSN  180
YKNDDHKTQR FEVNDAPDLN YAPNYNNQLQ PLLSSPRSTT IDPPHHHDQW EQLMKQPSRI  240
IDNTYHHHCQ HQSIACGWEQ MMIGSMSSSS SHGPDHESLL NLLYADKNNS VNIAADHHDK  300
NYEKILLSSD IASLDHDKTC MGSSLDVGMV SDLPMECAGL SFETENLLAF H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-431017017165NO APICAL MERISTEM PROTEIN
1ut4_B1e-431017017165NO APICAL MERISTEM PROTEIN
1ut7_A1e-431017017165NO APICAL MERISTEM PROTEIN
1ut7_B1e-431017017165NO APICAL MERISTEM PROTEIN
4dul_A1e-431017017165NAC domain-containing protein 19
4dul_B1e-431017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137795.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLM4E5Z00.0M4E5Z0_BRARP; Uncharacterized protein
STRINGBra024194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74