PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137841.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 495aa MW: 54776.6 Da PI: 7.0782

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.8	1.6e-34	47	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_009137841.1 47 LPAGVKFDPTDQELM-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnnmq 139 799**********.99**9995543233444334666646******.555666799**************87999999998 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009137841.1 140 gsgsSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195 887766788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-38	43	214	IPR003441	NAC domain
PROSITE profile	PS51005	32.578	47	214	IPR003441	NAC domain
Pfam	PF02365	4.2E-15	48	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MSKSNHAGSV TGSDIIDAKI EQHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 MEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDNNMQG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN 180 RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSTSSLNA IGGGGGEVNS 240 GGGGGEYHMR KDSGNTSGGS CSSSREILNV NHPNQSDEVG GVMAVPAAAT TVPPGLPSYA 300 MDQLSFVPFM KSFDEMARRE TPQTGQATCE DVMAEQHRFR HHHHASPSAT PNHGAHDHHH 360 PQHHHQQQQR HHAFNISQPT HPISTIISPS TSLHHASINI LDDNPYHVHR ILLPNENFQI 420 QQQHQEGEEE HNDGKMGARS ASGLEELIMG CTSSTTHHDV KDGSSSMGNQ QEAEWLKYST 480 FWPAPGSSDN QDHHG

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MSKSNHAGSV TGSDIIDAKI EQHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
MEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNNMQG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSTSSLNA IGGGGGEVNS  240
GGGGGEYHMR KDSGNTSGGS CSSSREILNV NHPNQSDEVG GVMAVPAAAT TVPPGLPSYA  300
MDQLSFVPFM KSFDEMARRE TPQTGQATCE DVMAEQHRFR HHHHASPSAT PNHGAHDHHH  360
PQHHHQQQQR HHAFNISQPT HPISTIISPS TSLHHASINI LDDNPYHVHR ILLPNENFQI  420
QQQHQEGEEE HNDGKMGARS ASGLEELIMG CTSSTTHHDV KDGSSSMGNQ QEAEWLKYST  480
FWPAPGSSDN QDHHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137841.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137841.1	0.0	PREDICTED: uncharacterized protein LOC103861883 isoform X2
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M4E5U8	0.0	M4E5U8_BRARP; Uncharacterized protein
STRING	Bra024152.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]