PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138144.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 235aa    MW: 25833.3 Da    PI: 4.3251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-171868155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  XP_009138144.1 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-121868IPR001471AP2/ERF domain
PROSITE profilePS5103222.81976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-311977IPR001471AP2/ERF domain
SMARTSM003802.3E-351982IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211976IPR016177DNA-binding domain
CDDcd000182.13E-322078No hitNo description
PRINTSPR003676.0E-102031IPR001471AP2/ERF domain
PRINTSPR003676.0E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSSSLGSDK EKKGSKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGSS AILNFPELSD SLPRPASLSP RDVRAAATKA ALMDFGSTVR SESETSEETA  120
VSGQKSESES NETTTSSKRS ESETSETASF SSFSVTSVDE DSTVSDDLDN IVELPSLGTS  180
LDESSEFVFF DSLEDLVFLP SWSLSGTVDD FTYDNDSLLN SVFQESFSWK HFPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.270840.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138144.11e-166PREDICTED: ethylene-responsive transcription factor ERF043-like
RefseqXP_013719573.11e-166ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0807e-93ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A397KXF11e-165A0A397KXF1_BRACM; Uncharacterized protein
TrEMBLM4F7I01e-165M4F7I0_BRARP; Uncharacterized protein
STRINGBra037041.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.16e-83ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]