PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138191.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 248aa    MW: 28479.7 Da    PI: 9.5489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W + Ed++l+++v+q+G+++W+ I + +  gRt+ +c+ rw + 
   XP_009138191.1 25 KGLWKPFEDDKLKQLVEQYGPHNWNNIGQLLS-GRTGQSCRQRWCNQ 70
                     5779****************************.***********985 PP
2Myb_DNA-binding58.41.6e-1877121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g++T+eE+e+l++a++ +G++ W+ Ia+ ++ gRt++ +k++++  
   XP_009138191.1  77 KGPFTKEEEERLLEAHRIHGSR-WAYIAKLFP-GRTDNALKNHYRVT 121
                      79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5612071IPR017930Myb domain
SuperFamilySSF466896.36E-2923118IPR009057Homeodomain-like
SMARTSM007175.1E-122473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-242678IPR009057Homeodomain-like
CDDcd001671.29E-112869No hitNo description
PfamPF139215.5E-182888No hitNo description
PROSITE profilePS5129424.45572126IPR017930Myb domain
SMARTSM007173.4E-1576124IPR001005SANT/Myb domain
CDDcd001671.77E-1179119No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2179125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MELATTEMSR GSNSCDNKKT EGHRKGLWKP FEDDKLKQLV EQYGPHNWNN IGQLLSGRTG  60
QSCRQRWCNQ LAPNINKGPF TKEEEERLLE AHRIHGSRWA YIAKLFPGRT DNALKNHYRV  120
TMKRRKRIGL SSTPTSPFNQ IRSPIFPLPR LSDNLYPFQR YQMHNSRGPW PYTSASAPTS  180
DQFGSSWISN AQQETDLYRR KSNELVDHQA ATPDHEKNSS GEDGTSMIDH GEKRDVPFFD  240
FLGVGLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31251257107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138191.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A397L2V00.0A0A397L2V0_BRACM; Uncharacterized protein
STRINGBra037004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.15e-98myb domain protein 69