PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138294.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 270aa    MW: 29680.8 Da    PI: 6.7714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17139188255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     gy+GVr+++ +g+++AeIrdp+    r +r++lg f tae+Aa+a+++a+  ++g
  XP_009138294.1 139 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGPFETAEDAARAYDRAAIGFRG 188
                     8********.**********83....57*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-35139202IPR001471AP2/ERF domain
PROSITE profilePS5103223.393139196IPR001471AP2/ERF domain
PfamPF008479.3E-11139187IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21139197IPR016177DNA-binding domain
CDDcd000183.93E-20140196No hitNo description
Gene3DG3DSA:3.30.730.101.2E-30140196IPR001471AP2/ERF domain
PRINTSPR003671.2E-10140151IPR001471AP2/ERF domain
PRINTSPR003671.2E-10162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHYPNNTRPE FVGAPASERD STRNRYQQKE QLSPEQELSV IVSALQHVLS GEKETTPYQG  60
FSSSSTVISA GMHSDTCQVC RIDGCLGCNY FFAPNQRIEK KQQVEVEEGV TSKSSGREST  120
VVAAAATGKI RKRKNKKNGY RGVRQRPWGK FAAEIRDPKR ATRVWLGPFE TAEDAARAYD  180
RAAIGFRGPR AKLNFPFVDY TSATTSSSVP AEDTRTNASA SVSAVDSVEA EQWRGGEGGD  240
CDMEEYLKMV MDFGNGDSSD SGNTIADMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24136197264ATERF1
3gcc_A4e-24136197264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.289993e-91leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138294.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ061e-106EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLM4DMC30.0M4DMC3_BRARP; Uncharacterized protein
STRINGBra017656.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-92redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]