PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138327.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 225aa    MW: 24377.1 Da    PI: 8.2889
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67e-3447102258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +kvrY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e
  XP_009138327.1  47 SKVRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 102
                     589**************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2649102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-3049101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2950100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41851100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-33149224IPR009057Homeodomain-like
SuperFamilySSF466891.17E-20150223IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-28163219IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNFEEQEEEM EMSGANPTGG YDSLSGEGAT SSGGGGGGGS RKTVGGSKVR YRECLKNHAV  60
NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GCHRNFHRKE TEVMSGRAHR VPTYYNRPPQ  120
LPPPGYLHLT SPAAAGQPYR PPAASGDEED TSNPSSSGGT RAKRFRTKFT AEQKEKMLAF  180
AERLGWRIQK HDDATVEQFC AETGVRRQVL KIWMHNNKNS LGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-361632201875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.12770.0bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532610.0AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138327.11e-169PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB611e-120ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM4DBG21e-168M4DBG2_BRARP; Uncharacterized protein
STRINGBra013822.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-112homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]