PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138356.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 292aa    MW: 32154.2 Da    PI: 8.7154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00118099221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk+F ++  L  H+r
  XP_009138356.1 80 PCTECGKTFWSWTALFGHMR 99
                    5******************8 PP
2zf-C2H210.70.0017165187123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F ++  L  H  +H
  XP_009138356.1 165 FECGGCKKVFGSHQALGGHRASH 187
                     89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01179101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09779106IPR007087Zinc finger, C2H2
PfamPF139127.5E-879103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-880101No hitNo description
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-481101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-8160187No hitNo description
PfamPF139121.2E-7164188IPR007087Zinc finger, C2H2
SMARTSM003553165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66165192IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-5229256No hitNo description
PROSITE profilePS501579.64230257IPR007087Zinc finger, C2H2
SMARTSM003550.11230252IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-11230254IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTTNNSDSDP NFHTPLNPTS NAIIPFYRTP NLQLALSPSY DQSPRKKRTK TVALPSSSSP  60
KPKPKYPRKP DPNAPKITRP CTECGKTFWS WTALFGHMRC HPERQWRGIN PPPNHRGPTP  120
ASFSNQNQRS PNWVSLMTEE DHEVASYLLM LANSTPSSSS SGERFECGGC KKVFGSHQAL  180
GGHRASHKNV KGCFAITNVA DDPMTVTTTP LTTPSDQDHQ GKIVTFMGNH KCNICFRVFS  240
SGQALGGHMR CHWEKEEETM VGGAFDLNVP ATIQDISTSD TTGCSLDLRL GL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138356.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138356.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-151ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLM4DMH10.0M4DMH1_BRARP; Uncharacterized protein
STRINGBra017706.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-142C2H2-like zinc finger protein