PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009138374.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 249aa MW: 27267.3 Da PI: 6.2457

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps++++++++++l + e++V++WFqNrRa+ k+ XP_009138374.1 93 RQRWTPTPVQLQILERIFDQgIGTPSKQKIKDITEELsqhgPIAEQNVYNWFQNRRARSKR 153 89***************99*************9999***************97 PP
2	Wus_type_Homeobox	101.2	7.4e-33	93	155	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G i ++NV++WFQNr+aR+++kq XP_009138374.1 93 RQRWTPTPVQLQILERIFDQGIGTPSKQKIKDITEELSQHGPIAEQNVYNWFQNRRARSKRKQ 155 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-17	87	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.864	89	154	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-15	91	156	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-13	91	158	IPR001356	Homeobox domain
Pfam	PF00046	5.8E-17	93	153	IPR001356	Homeobox domain
CDD	cd00086	8.39E-12	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMEWDNQQQA SNNPSSNLQG IDANGGSGSG GMYVKGMTDE QLETLRKQIA IYATICERLV 60 EMHKTLTSQQ DLAGRVGGLY ADPTFGHKMT GGRQRWTPTP VQLQILERIF DQGIGTPSKQ 120 KIKDITEELS QHGPIAEQNV YNWFQNRRAR SKRKQHGGGG GGGVGSSNNN NGETEVETDQ 180 TETVNEKRKM PESLLVLPDG NNNNGIGTTS ATSPRAEEDL CFHCPEMSSD LHLLGVLSNP 240 KSLMCFCRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.20571	0.0	bud\| leaf\| root\| silique

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138374.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like isoform X2
Swissprot	O81788	1e-108	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	M4DMI5	1e-177	M4DMI5_BRARP; Uncharacterized protein
STRING	Bra017720.1-P	1e-178	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-97	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]