PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138462.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 295aa    MW: 33910.4 Da    PI: 8.4744
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29175228356
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     r+rW+++LH+rFv+a++ +GGs++AtPk+i+++mkv+gLt++++kSHLQkYR++
  XP_009138462.1 175 RRRWSEDLHRRFVDALQMIGGSQVATPKQIKDIMKVDGLTNDEIKSHLQKYRMH 228
                     99**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.405170230IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-26171231IPR009057Homeodomain-like
SuperFamilySSF466891.97E-15171231IPR009057Homeodomain-like
PfamPF002493.5E-6175226IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.3E-25175228IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVQTDTDQRM SLDLNLYSLA KPLSQFLNDV SKIKDNHSKL FEIDEYVGKL EEERKKIDVF  60
KRELPLCMLL MNEAIERLKE EASSVKLEID NKKNWMNSTQ LWISKTNPQL PSTNGEEDRC  120
VTQTCSNNNN SNQGGAILSF NVPPRPPPLS LRTPILTDYS SRIEQSHPIQ KKELRRRWSE  180
DLHRRFVDAL QMIGGSQVAT PKQIKDIMKV DGLTNDEIKS HLQKYRMHIH KHPAKILTAS  240
DQHGLSRSDS PQGPLVDRGL FSNNGHSSEE EEKSDGRSWK SESRRKRQGL LDLEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.148142e-49bud| flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138462.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-110HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A397L4660.0A0A397L466_BRACM; Uncharacterized protein
STRINGBra017795.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-112G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]