PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138496.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 232aa    MW: 25301.1 Da    PI: 8.8512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.4e-292103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p+f     +++q +++ +v+k+FG++ ++ +++a+pe +r+++++sl++eA+ r+ +Pv+Ga+g++ +++++++q+
  XP_009138496.1   2 SCNGCRVLRKGCSETCILRPCFqwiesAESQGHATLFVAKFFGRAGLMTFISAVPELNRPALFQSLLFEACGRTVNPVNGAAGLLGSGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_009138496.1  97 AVETVLR 103
                     *998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.421107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCFQWIESAE SQGHATLFVA KFFGRAGLMT FISAVPELNR  60
PALFQSLLFE ACGRTVNPVN GAAGLLGSGN WHVCQAAVET VLRGGTLRPI SDLLPSPSLI  120
SSNDSTVICT DIGRFSTSRT KLSTSDMKEP PVNRRRSKTE RSESVIDVQL NHRLDLTIPV  180
VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCSENGIIGY NKRERKLLNL FV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.174870.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-115AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-115AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-115AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138496.11e-169PREDICTED: LOB domain-containing protein 39-like
RefseqXP_013728972.11e-169LOB domain-containing protein 39-like
SwissprotQ9SZE81e-116LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A291LR301e-167A0A291LR30_BRARR; Transcription factor LBD39a
TrEMBLA0A3P5ZUC21e-167A0A3P5ZUC2_BRACM; Uncharacterized protein
TrEMBLM4DMU51e-167M4DMU5_BRARP; Uncharacterized protein
STRINGBra017831.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-96LOB domain-containing protein 39