PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138531.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30475.5 Da    PI: 8.4188
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18123177256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_009138531.1 123 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 177
                     788899***********************************************98 PP
2HD-ZIP_I/II123.11.3e-39123212191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
  XP_009138531.1 123 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 212
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.006119179IPR001356Homeobox domain
SuperFamilySSF466894.23E-18121187IPR009057Homeodomain-like
SMARTSM003893.6E-15121183IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-17123177IPR009057Homeodomain-like
CDDcd000866.77E-16123180No hitNo description
PfamPF000461.6E-15123177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
SMARTSM003401.1E-25179222IPR003106Leucine zipper, homeobox-associated
PfamPF021834.5E-10179213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSIT PNIYNPAIKK TSTTVDHHLD PSLTLSLSGE SYMTKTVDMT  60
VAGAGSQVCR QTSSHSGISS FSSGRVKRER DICGEEEAGE TTERVVCSRV SDDHEDEEGV  120
SARKKLRLTK QQSALLEDSF KLHSTLNPKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ  180
TEVDCEFLKK CCETLTDENR RLQKELQDLK ALKMSQPFYM HMPAATLTMC PSCERLGGGG  240
GGAAGGGGGT AEVNGGTAKG AFSVVTKPRF FNPLTSPSTA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.186100.0bud| root| silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412540.0AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138531.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-150HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM4DMW60.0M4DMW6_BRARP; Uncharacterized protein
STRINGBra017853.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-151HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]