PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138744.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 228aa    MW: 26830.8 Da    PI: 4.7454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.85.9e-163182556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +f++eq++ Le  Fe++  +  +++ +LA++lgL+ rqV +W qN+Ra++k
  XP_009138744.1 31 KRFSEEQIKSLEVIFESETRLEPRKKVQLARELGLQPRQVAIWVQNKRARWK 82
                    57*************************************************9 PP
2HD-ZIP_I/II1154.5e-3729120293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +++r+s+eq+k+LE  Fe+e++Lep++Kv+lareLglqprqva+W qn+RAR+k+kqlEk+y+ L+++y++l+++ e ++ke+++L +el++
  XP_009138744.1  29 NHKRFSEEQIKSLEVIFESETRLEPRKKVQLARELGLQPRQVAIWVQNKRARWKSKQLEKEYDILRANYNNLASQFEIIKKEKQALVSELQR 120
                     579*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-161086IPR009057Homeodomain-like
SMARTSM003893.5E-142388IPR001356Homeobox domain
PROSITE profilePS5007115.3862484IPR001356Homeobox domain
PfamPF000462.4E-133182IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-163191IPR009057Homeodomain-like
CDDcd000861.66E-113285No hitNo description
PRINTSPR000316.8E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000316.8E-56480IPR000047Helix-turn-helix motif
PfamPF021835.5E-1684126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEEGDFFSCF SEINSGMTMN KKKMRKGTNH KRFSEEQIKS LEVIFESETR LEPRKKVQLA  60
RELGLQPRQV AIWVQNKRAR WKSKQLEKEY DILRANYNNL ASQFEIIKKE KQALVSELQR  120
LNEEMQKTKE ERNEECCGEQ RVALSSSTWS DNGKYEPEVR LNQGIVLCND DIKTEYFGFE  180
EESNHELINI VEQADDSGLT SSDNWGNFNS ESLLDQSSSN YPWWDFWS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138744.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0006020.0KT000602.1 Brassica napus note R1 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138744.11e-167PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotQ9M2761e-114ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLM4DD491e-166M4DD49_BRARP; Uncharacterized protein
STRINGBra014417.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-117homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]