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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009138858.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 305aa MW: 34288.8 Da PI: 9.919 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138858.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 343.9 | 3.9e-105 | 1 | 305 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
mdd g+r+ r+k+ + + + ++ +q+ms+iaerd++i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l+al++++n
XP_009138858.1 1 MDDGGHRDngRHKApQGQwmmQ---HQQPSMKQVMSIIAERDTAIQERNLAVSERKSAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRDN 92
9999998888888733222231...2333346*************************************************************99 PP
GAGA_bind 90 slasalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
s+a++ ++ ++ +++ ql+e + e ++++ ++ + + +++ +++k++k+ ++++ pk++++ vkke++
XP_009138858.1 93 SMATSR------QHQPHMPHHMLQLTEnNAYETREIGTSPPPTTGSALASAKPKRGRKVKEPKAAANKRGPKNQRK-------------VKKENE 168
855433......2223333333332221222222333333333333333444444444444444444444443333.............333333 PP
GAGA_bind 184 der................skaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
d+ sk+++ks ++ ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKm
XP_009138858.1 169 DDLskimsldyseeeeatgSKSDWKSEEMmvRLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKM 263
3112344455555556677*********96669************************************************************** PP
GAGA_bind 261 SqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
S++af+klL++LaaeG +dls pvDLkd WAkHGtn+++ti+
XP_009138858.1 264 SGSAFNKLLSRLAAEGhHDLSSPVDLKDRWAKHGTNRYITIK 305
****************88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQWM MQHQQPSMKQ VMSIIAERDT AIQERNLAVS ERKSAVAERD 60
MAFLQRDTAI AERNNAIMER DSALTALQYR DNSMATSRQH QPHMPHHMLQ LTENNAYETR 120
EIGTSPPPTT GSALASAKPK RGRKVKEPKA AANKRGPKNQ RKVKKENEDD LSKIMSLDYS 180
EEEEATGSKS DWKSEEMMVR LNQVVYDETT MPPPVCSCTG VLRQCYKWGN GGWQSSCCTT 240
TLSMHPLPAL PNKKHARVGG RKMSGSAFNK LLSRLAAEGH HDLSSPVDLK DRWAKHGTNR 300
YITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189297 | 1e-109 | AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence. |
| GenBank | EF529513 | 1e-109 | EF529513.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF529514 | 1e-109 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
