PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138871.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 567aa    MW: 63962.3 Da    PI: 10.2008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-133282248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G+++W+++a+++     +  ++ +c++++q+++
   XP_009138871.1 32 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVVsrssLDASAPSCRLKYQDLK 82
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.53E-63084IPR009057Homeodomain-like
SMARTSM007176.0E-73084IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-43181IPR009057Homeodomain-like
PfamPF002493.3E-113282IPR001005SANT/Myb domain
PROSITE profilePS500906.0863482IPR017877Myb-like domain
CDDcd001674.22E-73482No hitNo description
SMARTSM002972.9E-19123341IPR001487Bromodomain
SuperFamilySSF473707.59E-19227340IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.1E-18234358IPR001487Bromodomain
CDDcd043693.24E-17243336No hitNo description
PfamPF004393.0E-12245326IPR001487Bromodomain
PROSITE profilePS5001412.968251322IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MNDDYTTNIH SCSDPVNNRN GDGNGNQYQI SQVWGTWEEL LLTCAVKRHG SKDWDSVAKE  60
VVSRSSLDAS APSCRLKYQD LKRRFRDSVD DDDRRGNSDG EIPWLEQLRS LRVAELRRDV  120
QRCDESILSL QLKVKKLEEE EKDGDDVRSI NDETEPTNES NSTPPVDKIA DPDHKAATAT  180
TEEEEGTVSR RSGMSHSGEL GESGTYTGHR KRKGHEYMSG EDNSIRGESG GNIKPDGNQS  240
QPLIEIIKMI RSHPRGSVFE YRLRSQETKD YKRVIRQHLD IKTIEKKMEE GSYVSSSLSF  300
YRDLKLLFTN AIVFFPTSSS ESKAAQELRT LVSNEMKKET GKSSHRAIKS EGGSLLSKQK  360
ASAPPLVACK KKGSASKKTL PSSSSFKQKN EIQVSEEKDV TITAIATRRS RKTSKGMEVV  420
AKDTTMGRAK NNNKKQTDSK ADSSNDDDEE KTPKIEKKRA SEKKKSVAEF LKRIKNNSPP  480
KGKETTSKDQ KKSDDNVKKE NSKAKPRELR SNSTGKKKVE VESTENKRSS KRKQLKKEAE  540
EETAAATRKR GRELRKDNQQ PKKRNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526533KRSSKRKQ
2560566PKKRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563931e-40AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005191e-40BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138871.10.0PREDICTED: enolase-phosphatase E1-like isoform X1
TrEMBLM4DDE40.0M4DDE4_BRARP; Uncharacterized protein
STRINGBra014512.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-173DNA-binding bromodomain-containing protein