PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138872.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 539aa    MW: 60791.8 Da    PI: 10.1124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-133282248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G+++W+++a+++     +  ++ +c++++q+++
   XP_009138872.1 32 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVVsrssLDASAPSCRLKYQDLK 82
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-63084IPR009057Homeodomain-like
SMARTSM007176.0E-73084IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-43181IPR009057Homeodomain-like
PfamPF002493.0E-113282IPR001005SANT/Myb domain
PROSITE profilePS500906.0863482IPR017877Myb-like domain
CDDcd001673.23E-73482No hitNo description
SMARTSM002972.9E-19123341IPR001487Bromodomain
SuperFamilySSF473706.93E-19227340IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-18234356IPR001487Bromodomain
CDDcd043692.18E-17243336No hitNo description
PfamPF004392.8E-12245326IPR001487Bromodomain
PROSITE profilePS5001412.968251322IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNDDYTTNIH SCSDPVNNRN GDGNGNQYQI SQVWGTWEEL LLTCAVKRHG SKDWDSVAKE  60
VVSRSSLDAS APSCRLKYQD LKRRFRDSVD DDDRRGNSDG EIPWLEQLRS LRVAELRRDV  120
QRCDESILSL QLKVKKLEEE EKDGDDVRSI NDETEPTNES NSTPPVDKIA DPDHKAATAT  180
TEEEEGTVSR RSGMSHSGEL GESGTYTGHR KRKGHEYMSG EDNSIRGESG GNIKPDGNQS  240
QPLIEIIKMI RSHPRGSVFE YRLRSQETKD YKRVIRQHLD IKTIEKKMEE GSYVSSSLSF  300
YRDLKLLFTN AIVFFPTSSS ESKAAQELRT LVSNEMKKET GKSSHRAIKS EGGSLLSKQK  360
ASAPPLVACK KKGSASKKTL PSSSSFKQKN EIQVSEEKDV TITAIATRRS RKTSKGMEVV  420
AKDTTMGRAK NNNKKQTDSK ADSSNDDDEE KTPKIEKKRA SEKKKSVAEF LKRIKNNSPP  480
KGKETTSKKK VEVESTENKR SSKRKQLKKE AEEETAAATR KRGRELRKDN QQPKKRNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1498505KRSSKRKQ
2532538PKKRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563931e-40AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005191e-40BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138872.10.0PREDICTED: bromodomain-containing protein bet-1-like isoform X2
TrEMBLA0A3P6C7V40.0A0A3P6C7V4_BRACM; Uncharacterized protein
STRINGBra014512.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-145DNA-binding bromodomain-containing protein