PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138982.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 358aa    MW: 39311.4 Da    PI: 7.917
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.38.3e-32136235197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     +++++++ sk+ dqk+fel
  XP_009138982.1 136 KMFQRLFSETDEIAMLQGFLDFTSTRG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNalkkGRTEDKVTCSKDLDQKAFEL 229
                     58*************************.9*************************************99998776678889999************ PP

          DUF573  92 skkiWg 97 
                     s+kiWg
  XP_009138982.1 230 SRKIWG 235
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-26138235IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAPKDKIENP PAAASSSEEE EEEESGSSVE ASGSSSDDEA GHVQSKLTQK SPKKKPDSDS  60
EEDESDSDSA PPTKTKPLNA VVTSGSVPAS SSTAKRSLMK ADEEEPKKKV KTSATELPKK  120
KDEEVVKKIS GEDAKKMFQR LFSETDEIAM LQGFLDFTST RGDPYENMDA FCDYVKTLID  180
FNASKAQIVT KLQRCKKKFV NIVKNALKKG RTEDKVTCSK DLDQKAFELS RKIWGVNGVL  240
PAKPRKKSND VVKSPPSPSH TPKKEVEKRK GSVVVDAQLS SSREVALFFK AANVSVFGLD  300
ESTVSAVWDM VEDGAKKREV EEKLKKLKDM QVELCLQRTA LLDTTAKMIF KDNASSST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.84760.0bud| leaf| root| silique
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138982.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-98STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLM4DBL30.0M4DBL3_BRARP; Uncharacterized protein
STRINGBra013873.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-89DNA-binding storekeeper protein-related transcriptional regulator